Poor stand and stunted plants

Poor stand and stunted plants have been commonplace throughout much of Missouri so far this season. When scouting, these are the best areas to begin looking for evidence of early season seedling disease.

Editor’s note: The following was written by Kaitlyn Bissonnette, University of Missouri Division of Plant Sciences, for the university’s Integrated Pest Management website May 24.


Conditions this spring have not only made planting a challenge, but have also resulted in challenges for seedling emergence.

Typically, as the plant ages, the risk of infection decreases. However, when development is slowed, the infection period is lengthened.

Seedling diseases can be hard to distinguish from other agronomic issues based on symptoms alone as above-ground symptoms include stunting, poor stand, wilting, uneven plant height and chlorosis. When seedlings are carefully dug from the soil, brown or tan lesions may be observed on the root tissue; however, lesions may not appear in all cases and cannot be used for diagnosis.

Due to the nature of the seedling disease complex, a post-mortem analysis of an affected seedling may result in the recovery of a whole host of pathogens. The kicker becomes the fact that, quite possibly, none of them may be the real reason why the seedling has died.

There are two main types of seedling diseases: those that are seedborne and those that are soilborne.

In corn, seedborne pathogens are commonly associated with ear rot pathogens. These include several members of the genus Fusarium such as F. verticilloides, F. proliferatum, F. subglutinans and F. graminearum as well as the pathogens Penicillium, Aspergillus and Trichoderma.

In soybeans, the most common seedborne pathogens are Fusarium graminearum and pathogens that belong to the Phomopsis seed decay/Diaporthe complex.

There are also pathogens that are soilborne that live in the soil that can cause recurring problems in some fields. Corn pathogens include Pythium species, Rhizoctonia solani, and some member of the genus Fusarium. In soybeans, Pythium species, Phytophthora sojae, Rhizoctonia solani and several Fusarium species are relatively common seedling pathogens.

Fusarium virguliforme, the pathogen that causes soybean sudden death syndrome (SDS), also favors these cool, wet conditions, so it will be important to monitor those soybean fields that have already been planted as they approach the reproductive growth stages

Management of seedling diseases begins before seed is ever sown. Seed treatments are often beneficial as a barrier to these early-season pathogens, but in years such as these, extended wet weather can result in reduced efficacy of seed treatment products due to high disease pressure.

seedling disease

A young corn seedling infected by seedling disease in wet soils due to spring rains in central Missouri. Arrows point to areas where pathogen has invaded and decayed young root tissue despite presence of seed treatment. 

There are many seed treatment products commercially available for managing a wide variety of seedling pathogens for both corn and soybean.

It is important to note that some of the sickly-looking plants may be responding to nutrient deficiencies, cool temperatures or both, and might not be the result of a disease.